PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015318P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 143aa    MW: 16502.4 Da    PI: 4.9402
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015318P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB138.71.6e-4312100795
           NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     +lPianv rimkk++P+++kisk+ak+t+qec+ efisfvtsea+++c+ e+r+t+ngdd++wa+a+ G+++y+e + +yl+kyre+e+
  MELO3C015318P1  12 ELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER 100
                     69*************************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-416132IPR009072Histone-fold
PfamPF008086.3E-261275IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.61E-3312134IPR009072Histone-fold
PRINTSPR006158.9E-144058No hitNo description
PRINTSPR006158.9E-145977No hitNo description
PRINTSPR006158.9E-147896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MENHNNGDEF LELPIANVER IMKKIIPQKG KISKEAKKTM QECANEFISF VTSEAAQRCH  60
YENRRTLNGD DICWAFASSG LDNYAEVFAK YLHKYREVER IKVDEYKCKI TQRLLPQDDD  120
DKEQEDNHRS IDGEIGETSS PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-331397993NF-YB
4awl_B1e-3313971094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-3313971094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451142.11e-104PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040271e-43NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0A0LW123e-65A0A0A0LW12_CUCSA; Uncharacterized protein
STRINGPOPTR_0013s02030.12e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-45nuclear factor Y, subunit B4